miRBase entry: 19755563

Repertoire and evolution of miRNA genes in four divergent nematode species

PubMed ID 19755563
Authors "de Wit E, Linsen SE, Cuppen E, Berezikov E"
Journal "Genome Res
Volume 19
Pages 2064-2074

There are 276 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
cel-mir-2221 MI0010974 1 chrX 1390847 1390964 + High
cbr-mir-73b MI0010975 None chrI 6796224 6796317 - -
cbr-mir-238 MI0010976 None chrIII 14445069 14445183 - High
cbr-mir-76 MI0010977 None chrIII 2936452 2936547 - High
cbr-mir-35c-1 MI0010978 None chrX 15370826 15370939 + Medium
cbr-mir-35e MI0010979 None chrX 15371263 15371379 + High
cbr-mir-35c-2 MI0010980 None chrX 15375003 15375087 + High
cbr-mir-35d MI0010981 None chrII 8378172 8378261 + High
cbr-mir-90b MI0010982 None chrIII 14456967 14457079 - High
cbr-mir-235b MI0010983 None chrI 10817837 10817939 - High
cbr-mir-56 MI0010984 None chrX 16963326 16963441 - High
cbr-mir-54a MI0010985 None chrX 16963746 16963863 - High
cbr-mir-237 MI0010986 None chrX 16760695 16760805 - High
cbr-mir-1822 MI0010987 None chrII 9704335 9704430 - -
cbr-mir-58b MI0010988 None chrIV 149566 149659 + -
cbr-mir-35b-1 MI0010989 None chrX 15371137 15371225 + High
cbr-mir-35b-2 MI0010990 None chrX 15372023 15372125 + High
cbr-mir-35b-3 MI0010991 None chrX 15372198 15372297 + -
cbr-mir-35b-4 MI0010992 None chrX 15372337 15372439 + High
cbr-mir-35b-5 MI0010993 None chrX 15372523 15372639 + High
cbr-mir-35b-6 MI0010994 None chrX 15372684 15372776 + High
cbr-mir-35b-7 MI0010995 None chrX 15372847 15372946 + High
cbr-mir-35b-8 MI0010996 None chrX 15372994 15373100 + High
cbr-mir-35b-9 MI0010997 None chrX 15373162 15373261 + High
cbr-mir-35b-10 MI0010998 None chrX 15373309 15373415 + High
cbr-mir-35b-11 MI0010999 None chrX 15373460 15373568 + High
cbr-mir-35b-12 MI0011000 None chrX 15373627 15373730 + High
cbr-mir-35b-13 MI0011001 None chrX 15373775 15373862 + High
cbr-mir-65 MI0011002 None chrIII 868808 868904 - High
cbr-mir-1817 MI0011003 None chrI 11435392 11435499 - -
cbr-mir-2222-1 MI0011004 None chrX 20535778 20535892 + -
cbr-mir-2227 MI0011005 None chrI 6948887 6948995 - -
cbr-mir-41b MI0011006 None chrII 8378050 8378149 + High
cbr-mir-2222-2 MI0011007 None chrX 20537156 20537270 - -
cbr-mir-64b MI0011008 None chrIII 869080 869196 - High
cbr-mir-2223 MI0011010 None chrIV 15568442 15568555 - -
cbr-mir-2224 MI0011011 None chrX 15668995 15669114 - -
cbr-mir-54b MI0011012 None chrX 16963589 16963700 - High
cbr-mir-54c MI0011013 None chrX 16963921 16964016 - High
cbr-mir-54d MI0011014 None chrX 16964062 16964175 - High
cbr-mir-2225 MI0011015 None chrI 6952711 6952810 - High
cbr-mir-2226 MI0011016 None chrIII 869446 869544 - High
cbr-mir-74b MI0011017 None chrX 4426711 4426827 - High
crm-mir-786 MI0011018 None Crem_Contig0 181392 181500 - High
crm-mir-41 MI0011019 None Crem_Contig1 1740555 1740672 - High
crm-mir-40 MI0011020 None Crem_Contig1 1740683 1740782 - High
crm-mir-39 MI0011021 None Crem_Contig1 1740785 1740878 - High
crm-mir-77-2 MI0011022 None Crem_Contig41 671584 671703 - -
crm-mir-49 MI0011023 None Crem_Contig50 190582 190691 - -
crm-mir-57 MI0011024 None Crem_Contig51 436055 436166 - High
crm-mir-35a-1 MI0011025 None Crem_Contig93 221595 221680 - -
crm-mir-35b MI0011026 None Crem_Contig93 221703 221796 - High
crm-mir-35c-1 MI0011027 None Crem_Contig93 222297 222390 - High
crm-mir-35d-1 MI0011028 None Crem_Contig93 222710 222800 - -
crm-mir-35e-1 MI0011029 None Crem_Contig93 222856 222943 - High
crm-mir-35f MI0011030 None Crem_Contig93 223206 223319 - High
crm-mir-35e-2 MI0011031 None Crem_Contig93 223699 223796 - High
crm-mir-83 MI0011032 None Crem_Contig18 90666 90763 - High
crm-mir-77-1 MI0011033 None Crem_Contig42 93972 94079 - High
crm-mir-232-1 MI0011034 None Crem_Contig20 672796 672913 - High
crm-mir-228 MI0011035 None Crem_Contig61 99434 99527 - High
crm-mir-90 MI0011036 None Crem_Contig186 932 1042 - High
crm-let-7 MI0011037 None Crem_Contig27 289521 289633 - High
crm-mir-238 MI0011038 None Crem_Contig431 8580 8699 - Medium
crm-mir-75 MI0011039 None Crem_Contig233 12313 12407 - High
crm-mir-74a MI0011040 None Crem_Contig233 15995 16114 - High
crm-mir-74b MI0011041 None Crem_Contig233 16138 16229 - High
crm-mir-73 MI0011042 None Crem_Contig233 16295 16406 - High
crm-mir-76 MI0011043 None Crem_Contig79 187887 187981 - High
crm-mir-61 MI0011044 None Crem_Contig5 484744 484840 - High
crm-mir-242 MI0011045 None Crem_Contig125 259161 259274 - -
crm-mir-70 MI0011046 None Crem_Contig8 1876810 1876909 - High
crm-mir-249 MI0011047 None Crem_Contig0 4287076 4287170 + -
crm-mir-231 MI0011048 None Crem_Contig80 211526 211639 + High
crm-mir-85 MI0011049 None Crem_Contig1 563160 563265 + High
crm-mir-42 MI0011050 None Crem_Contig1 1324268 1324371 + High
crm-mir-43 MI0011051 None Crem_Contig1 1324406 1324505 + High
crm-mir-252 MI0011052 None Crem_Contig1 1805698 1805793 + High
crm-mir-355 MI0011053 None Crem_Contig1 2626954 2627065 + -
crm-mir-239b MI0011054 None Crem_Contig93 352923 353018 + -
crm-mir-232-2 MI0011055 None Crem_Contig894 4936 5053 + High
crm-mir-787 MI0011056 None Crem_Contig15 964417 964534 + High
crm-mir-34 MI0011057 None Crem_Contig15 1362286 1362373 + High
crm-mir-82 MI0011058 None Crem_Contig15 1754400 1754491 + High
crm-mir-233 MI0011059 None Crem_Contig25 189024 189124 + High
crm-mir-124a MI0011060 None Crem_Contig67 54958 55051 + High
crm-mir-47 MI0011061 None Crem_Contig31 438956 439060 + High
crm-mir-790-2 MI0011062 None Crem_Contig1872 4545 4659 + -
crm-mir-248 MI0011063 None Crem_Contig233 105010 105127 + High
crm-mir-58a MI0011064 None Crem_Contig6993 41 151 + High
crm-mir-236 MI0011065 None Crem_Contig6 993548 993655 + High
crm-mir-35a-2 MI0011066 None Crem_Contig93 221979 222067 - High
crm-mir-35c-2 MI0011067 None Crem_Contig93 223885 224001 - Medium
crm-mir-230 MI0011068 None Crem_Contig0 2006530 2006623 - High
crm-mir-52-1 MI0011069 None Crem_Contig1341 55 147 + High
crm-mir-55 MI0011070 None Crem_Contig43 489184 489298 + High
crm-mir-237 MI0011071 None Crem_Contig43 596094 596209 + High
crm-mir-79 MI0011072 None Crem_Contig34 372254 372373 + High
crm-mir-235 MI0011073 None Crem_Contig4 747854 747962 + High
crm-mir-84 MI0011074 None Crem_Contig45 340217 340324 + High
crm-mir-60 MI0011075 None Crem_Contig6 1681930 1682025 + High
crm-mir-48 MI0011076 None Crem_Contig8 84279 84372 + High
crm-mir-1 MI0011077 None Crem_Contig9 244578 244673 + High
crm-mir-72 MI0011078 None Crem_Contig94 152301 152413 - High
crm-mir-81 MI0011079 None Crem_Contig15 1757270 1757363 - High
crm-mir-52-2 MI0011080 None Crem_Contig20 701941 702033 - High
crm-mir-246-1 MI0011081 None Crem_Contig1306 7301 7396 - High
crm-mir-2 MI0011082 None Crem_Contig68 361255 361350 - High
crm-mir-784 MI0011083 None Crem_Contig76 9646 9739 - High
crm-mir-45 MI0011084 None Crem_Contig1 1319070 1319178 - High
crm-mir-250 MI0011085 None Crem_Contig5 484593 484712 - High
crm-mir-87 MI0011086 None Crem_Contig5 734294 734391 - High
crm-mir-244 MI0011087 None Crem_Contig11 469720 469839 - High
crm-mir-86 MI0011088 None Crem_Contig40 194137 194236 + High
crm-mir-44 MI0011089 None Crem_Contig1 1324559 1324656 + High
crm-mir-50 MI0011090 None Crem_Contig11 669942 670037 - High
crm-mir-64c MI0011091 None Crem_Contig41 72317 72434 + -
crm-mir-64d MI0011092 None Crem_Contig41 72472 72586 + -
crm-mir-67 MI0011093 None Crem_Contig12 55407 55498 + High
crm-mir-46 MI0011094 None Crem_Contig12 1283899 1284006 - High
crm-lin-4 MI0011095 None Crem_Contig17 1151377 1151480 + Medium
crm-mir-246-2 MI0011096 None Crem_Contig20 644631 644726 + High
crm-mir-247 MI0011097 None Crem_Contig0 2834956 2835058 - High
crm-mir-785 MI0011098 None Crem_Contig0 4287759 4287869 - Low
crm-mir-38 MI0011099 None Crem_Contig1 1740947 1741066 - High
crm-mir-357 MI0011100 None Crem_Contig13 949367 949475 - High
crm-mir-35g MI0011101 None Crem_Contig93 222433 222546 - High
crm-mir-35d-2 MI0011102 None Crem_Contig93 223544 223635 - High
crm-mir-59 MI0011103 None Crem_Contig20 889052 889171 - High
crm-mir-259 MI0011104 None Crem_Contig60 205404 205497 - High
crm-mir-790-1 MI0011105 None Crem_Contig61 95769 95883 - -
crm-mir-788 MI0011106 None Crem_Contig72 198587 198683 - High
crm-mir-253 MI0011107 None Crem_Contig8 1135636 1135729 - High
crm-mir-245 MI0011108 None Crem_Contig143 167381 167479 + High
crm-mir-356 MI0011109 None Crem_Contig46 50940 51033 + -
crm-mir-241 MI0011110 None Crem_Contig8 82873 82989 + High
crm-mir-35c-3 MI0011111 None Crem_Contig93 223069 223163 - Medium
crm-mir-58b MI0011112 None Crem_Contig49 415875 415983 + High
crm-mir-239a MI0011113 None Crem_Contig93 351743 351835 - High
crm-mir-71 MI0011114 None Crem_Contig68 372762 372881 - High
crm-mir-80 MI0011115 None Crem_Contig431 2337 2436 - High
crm-mir-63 MI0011116 None Crem_Contig50 453664 453781 + High
crm-mir-2227 MI0011117 None Crem_Contig22 610767 610873 - High
crm-mir-2228 MI0011118 None Crem_Contig74 221632 221748 - Medium
crm-mir-62 MI0011119 None Crem_Contig76 349800 349875 - -
crm-mir-2229 MI0011120 None Crem_Contig0 2910785 2910875 + -
crm-mir-64e MI0011121 None Crem_Contig41 72615 72729 + High
crm-mir-2230 MI0011122 None Crem_Contig74 222357 222462 + High
crm-mir-2231 MI0011123 None Crem_Contig233 19016 19129 - High
crm-mir-64a MI0011124 None Crem_Contig41 71965 72073 + High
crm-mir-66 MI0011125 None Crem_Contig41 72081 72200 + High
crm-mir-64b MI0011126 None Crem_Contig41 72225 72316 + High
ppc-mir-1 MI0011127 None ABKE03000090.1 2889265 2889368 + -
ppc-mir-45 MI0011128 None ABKE03000123.1 6561375 6561470 - High
ppc-mir-42a MI0011129 None ABKE03000123.1 6561540 6561644 - High
ppc-mir-63g MI0011130 None ABKE03000028.1 914719 914813 + -
ppc-mir-2232-1 MI0011131 None ABKE03000119.1 562163 562262 + High
ppc-mir-87 MI0011132 None ABKE03000021.1 530085 530182 + High
ppc-mir-124 MI0011133 None ABKE03000070.1 151826 151927 - -
ppc-mir-239-1 MI0011134 None ABKE03000123.1 3199255 3199360 + High
ppc-mir-37 MI0011135 None ABKE03000123.1 8322295 8322385 - High
ppc-lin-4 MI0011136 None ABKE03000127.1 381597 381705 - High
ppc-mir-252 MI0011137 None ABKE03000131.1 374300 374404 - -
ppc-mir-63b MI0011138 None None None High
ppc-mir-63c-1 MI0011139 None ABKE03000073.1 892478 892580 + High
ppc-mir-63c-2 MI0011140 None None None High
ppc-mir-63c-3 MI0011141 None ABKE03000073.1 892918 893033 + High
ppc-mir-63c-4 MI0011142 None ABKE03000073.1 892769 892884 + High
ppc-mir-79 MI0011143 None ABKE03000043.1 294941 295036 - High
ppc-mir-84b MI0011144 None ABKE03000008.1 1931523 1931625 + -
ppc-mir-42b MI0011145 None ABKE03000031.1 559584 559674 - -
ppc-mir-239-2 MI0011146 None ABKE03000005.1 1277953 1278067 + -
ppc-mir-46 MI0011147 None ABKE03000092.1 4795409 4795519 - High
ppc-mir-81 MI0011148 None ABKE03000007.1 508615 508700 - High
ppc-let-7 MI0011149 None ABKE03000119.1 942519 942629 - High
ppc-mir-63a MI0011150 None ABKE03000119.1 561812 561931 + High
ppc-mir-71a MI0011151 None ABKE03000107.1 286429 286541 + High
ppc-mir-63d MI0011152 None ABKE03000028.1 915392 915493 + -
ppc-mir-2232-2 MI0011153 None ABKE03000060.1 1495630 1495749 + -
ppc-mir-72 MI0011154 None ABKE03000011.1 1057563 1057671 - High
ppc-mir-86 MI0011155 None ABKE03000122.1 227947 228051 - High
ppc-mir-242 MI0011156 None ABKE03000024.1 8175369 8175488 + -
ppc-mir-63f MI0011157 None ABKE03000073.1 893370 893471 + -
ppc-mir-65 MI0011158 None ABKE03000119.1 316794 316890 - -
ppc-mir-84a MI0011159 None ABKE03000008.1 1931245 1931360 + -
ppc-mir-2252 MI0011160 None ABKE03000089.1 1839992 1840071 - High
ppc-mir-2253b MI0011161 None ABKE03000092.1 1315868 1315980 + -
ppc-mir-2258 MI0011162 None ABKE03000092.1 345785 345895 + High
ppc-mir-2234a MI0011163 None ABKE03000131.1 532559 532678 + High
ppc-mir-2234b MI0011164 None ABKE03000131.1 532439 532553 + High
ppc-mir-236 MI0011165 None ABKE03000012.1 103807 103921 + High
ppc-mir-2244 MI0011166 None ABKE03000060.1 7338922 7339002 - High
ppc-mir-2248 MI0011167 None ABKE03000060.1 8726562 8726668 - High
ppc-mir-2253a MI0011168 None ABKE03000087.1 518488 518551 - -
ppc-mir-2254 MI0011169 None ABKE03000021.1 1483868 1483956 + High
ppc-mir-63e MI0011170 None ABKE03000028.1 916252 916352 + -
ppc-mir-63h MI0011171 None ABKE03000028.1 915178 915286 + -
ppc-mir-2255 MI0011172 None ABKE03000104.1 1644164 1644249 - -
ppc-mir-2256 MI0011173 None ABKE03000104.1 1684549 1684662 - High
ppc-mir-2235a-1 MI0011174 None ABKE03000123.1 4484486 4484575 - High
ppc-mir-2235a-2 MI0011175 None ABKE03000123.1 4485382 4485471 - High
ppc-mir-2235a-3 MI0011176 None ABKE03000123.1 4485830 4485919 - High
ppc-mir-2235a-4 MI0011177 None ABKE03000123.1 4486502 4486591 - High
ppc-mir-2235a-5 MI0011178 None ABKE03000123.1 4486054 4486143 - High
ppc-mir-2235a-6 MI0011179 None ABKE03000123.1 4491870 4491959 - High
ppc-mir-2235a-7 MI0011180 None ABKE03000123.1 4486950 4487039 - High
ppc-mir-2235a-8 MI0011181 None ABKE03000123.1 4492321 4492407 - High
ppc-mir-2238b-1 MI0011182 None ABKE03000059.1 713454 713565 - -
ppc-mir-2236a MI0011183 None ABKE03000093.1 3220764 3220855 - High
ppc-mir-2236b MI0011184 None ABKE03000093.1 3220933 3221024 - -
ppc-mir-2259 MI0011185 None ABKE03000007.1 743374 743493 - -
ppc-mir-2260 MI0011186 None None None High
ppc-mir-2261 MI0011187 None ABKE03000015.1 215648 215728 - High
ppc-mir-2262 MI0011188 None ABKE03000005.1 1337907 1338019 - High
ppc-mir-2240b MI0011189 None ABKE03000048.1 536132 536221 + High
ppc-mir-2240a-1 MI0011190 None ABKE03000048.1 536003 536099 + High
ppc-mir-2240a-2 MI0011191 None ABKE03000048.1 535876 535972 + High
ppc-mir-2240c MI0011192 None ABKE03000048.1 535739 535853 + High
ppc-mir-2238a-1 MI0011193 None ABKE03000048.1 448529 448646 + -
ppc-mir-2238a-2 MI0011194 None ABKE03000048.1 28065 28175 + -
ppc-mir-2238a-3 MI0011195 None ABKE03000093.1 9309218 9309314 + High
ppc-mir-2238c MI0011196 None ABKE03000093.1 8986518 8986623 + High
ppc-mir-234 MI0011197 None ABKE03000123.1 7127338 7127453 - -
ppc-mir-54 MI0011198 None ABKE03000107.1 3735128 3735247 + High
ppc-mir-55b MI0011199 None ABKE03000107.1 3735291 3735382 + High
ppc-mir-2263 MI0011200 None ABKE03000107.1 3739758 3739849 + -
ppc-mir-2264 MI0011201 None ABKE03000131.1 545120 545221 - High
ppc-mir-232 MI0011202 None ABKE03000070.1 1947450 1947547 + -
ppc-mir-2265 MI0011203 None ABKE03000024.1 401564 401653 - -
ppc-mir-2266 MI0011204 None ABKE03000024.1 401456 401555 - High
ppc-mir-2237a MI0011205 None ABKE03000024.1 401313 401403 - Medium
ppc-mir-2237b MI0011206 None ABKE03000024.1 400877 400968 - -
ppc-mir-2267 MI0011207 None ABKE03000073.1 220769 220883 + High
ppc-mir-312a MI0011208 None ABKE03000028.1 1954281 1954376 + -
ppc-mir-2243 MI0011209 None ABKE03000012.1 5532389 5532484 + High
ppc-mir-2242-1 MI0011210 None ABKE03000104.1 775777 775894 + -
ppc-mir-2242-2 MI0011211 None ABKE03000104.1 776047 776164 + -
ppc-mir-2245 MI0011212 None ABKE03000021.1 2197296 2197404 - High
ppc-mir-2238d MI0011213 None ABKE03000020.1 187290 187391 + -
ppc-mir-2246 MI0011214 None ABKE03000119.1 316972 317071 - High
ppc-mir-2249 MI0011215 None None None Medium
ppc-mir-67 MI0011216 None ABKE03000059.1 307331 307436 + High
ppc-mir-2238b-2 MI0011217 None ABKE03000059.1 500835 500925 + -
ppc-mir-38 MI0011218 None ABKE03000031.1 559701 559798 - High
ppc-mir-2250 MI0011219 None ABKE03000123.1 3623885 3623989 + -
ppc-mir-55a MI0011220 None ABKE03000094.1 1044747 1044866 - -
ppc-mir-56 MI0011221 None ABKE03000094.1 1044609 1044714 - High
ppc-mir-993 MI0011222 None ABKE03000122.1 634088 634207 + High
ppc-mir-2238e MI0011223 None ABKE03000048.1 273544 273640 - High
ppc-mir-2238a-4 MI0011224 None ABKE03000048.1 194478 194597 - -
ppc-mir-2251a MI0011225 None ABKE03000093.1 9033595 9033694 - High
ppc-mir-2b MI0011226 None ABKE03000053.1 567859 567966 + -
ppc-mir-2268 MI0011227 None ABKE03000060.1 1496021 1496120 + -
ppc-mir-240 MI0011228 None ABKE03000096.1 196273 196389 + High
ppc-mir-2269 MI0011229 None ABKE03000094.1 1114611 1114686 + -
ppc-mir-2270 MI0011230 None ABKE03000121.1 738553 738659 - -
ppc-mir-2271 MI0011231 None ABKE03000107.1 3735376 3735485 + High
ppc-mir-2239-1 MI0011232 None ABKE03000040.1 506120 506235 - High
ppc-mir-2237c MI0011233 None ABKE03000024.1 401188 401278 - Medium
ppc-mir-2272 MI0011234 None ABKE03000073.1 220023 220140 + High
ppc-mir-2273 MI0011235 None ABKE03000073.1 220330 220428 + High
ppc-mir-2241a-3 MI0011236 None ABKE03000012.1 5240344 5240461 + High
ppc-mir-2241b-2 MI0011237 None ABKE03000012.1 4725174 4725270 + High
ppc-mir-2241a-4 MI0011238 None ABKE03000012.1 5240628 5240724 + High
ppc-mir-2241b-3 MI0011239 None ABKE03000012.1 5240766 5240862 + High
ppc-mir-2241a-5 MI0011240 None ABKE03000012.1 5240909 5240996 + High
ppc-mir-2274 MI0011241 None ABKE03000007.1 1081291 1081384 - High
ppc-mir-2233 MI0011242 None ABKE03000007.1 1081159 1081257 - High
ppc-mir-2247 MI0011243 None ABKE03000107.1 4533559 4533651 - High
ppc-mir-279 MI0011244 None ABKE03000053.1 567705 567808 + High
ppc-mir-2239-2 MI0011245 None None None High
ppc-mir-2241a-1 MI0011246 None ABKE03000012.1 4725724 4725811 + High
ppc-mir-2241a-2 MI0011247 None ABKE03000012.1 4725593 4725680 + High
ppc-mir-9 MI0011248 None ABKE03000043.1 208379 208483 + High
ppc-mir-2241c MI0011249 None ABKE03000012.1 4725036 4725132 + High
ppc-mir-2241b-1 MI0011250 None ABKE03000012.1 4724898 4724994 + High



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