Stem-loop crm-mir-42

Accession

MI0011050

Description

Caenorhabditis remanei crm-mir-42 precursor miRNA

Sequence

67265 reads, 573.0 reads per million, 9 experiments

caaacccuugucggaccuuUGUGGAUGUUUCCUUUUUCGGUGAAGuuguuccguugaauuaucuucuUCACCGGGUUAACAUCUACAGagguccucgaggguuu
.(((((((((..(((((((((((((((((.((.....((((((((..((((....))))......))))))))))..))))))))))))))))).)))))))))

Structure

c         uc                 -U  UUUUU        ----uu    c 
 aaacccuug  ggaccuuUGUGGAUGUU  CC     CGGUGAAG      guuc g
 |||||||||  |||||||||||||||||  ||     ||||||||      ||||  
 uuugggagc  ccuggaGACAUCUACAA  GG     GCCACUuc      uaag u
-         -u                 UU  -----        uucuau    u 

Annotation confidence High

Genome context

Crem_Contig1: 1324268-1324371 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from crm-mir-42

Mature crm-miR-42-5p

• Accession: MIMAT0056853
• Description: Caenorhabditis remanei crm-miR-42-5p mature miRNA
• Sequence: 20 - UGUGGAUGUUUCCUUUUUCGGUGAAG - 45
• Evidence: experimental ; 454 [1]

Mature crm-miR-42-3p

• Accession: MIMAT0011532
• Description: Caenorhabditis remanei crm-miR-42-3p mature miRNA
• Sequence: 68 - UCACCGGGUUAACAUCUACAG - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074