Stem-loop ppc-mir-63b

Accession

MI0011138

Description

Pristionchus pacificus ppc-mir-63b precursor miRNA

Sequence

55653 reads, 3824.0 reads per million, 12 experiments

gaacuauccgauccaucgcucacaugggaacCCUCUCGACUUUUGUGUCUUAGAcuguuucgaaaaguucUAUGACACUGAAGCGAGAGUGUucccagugaacuuuugggucaguuc
(((((....((((((....((((.(((((((.((((((.((((.(((((.((((((.........)).)))).))))).)))))))))).))))))))))).....)))))))))))

Structure

     aucc      -ucgc    a       C      A    U     U    -  guu 
gaacu    gaucca     ucac ugggaac CUCUCG CUUU GUGUC UAGA cu   u
|||||    ||||||     |||| ||||||| |||||| |||| ||||| |||| ||   c
cuuga    cugggu     agug acccuUG GAGAGC GAAG CACAG AUcu ga   g
     ----      uuuca    -       U      -    U     U    u  aaa 

Annotation confidence High

Genome context

Unknown

Mature ppc-miR-63b-5p

• Accession: MIMAT0056921
• Description: Pristionchus pacificus ppc-miR-63b-5p mature miRNA
• Sequence: 32 - CCUCUCGACUUUUGUGUCUUAGA - 54
• Evidence: experimental ; 454 [1]

Mature ppc-miR-63b-3p

• Accession: MIMAT0011650
• Description: Pristionchus pacificus ppc-miR-63b-3p mature miRNA
• Sequence: 71 - UAUGACACUGAAGCGAGAGUGU - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074