Stem-loop crm-mir-35e-1

Accession

MI0011029

Description

Caenorhabditis remanei crm-mir-35e-1 precursor miRNA

Sequence

43628 reads, 427.0 reads per million, 9 experiments

augacgggaaccgUGCUGGUUUCGAACUCGGUAAUAgaccagaagaaagcuaUCACCGGGUGGAAACUGGUACGgguccccgagucgu
(((((((((.(((((((((((((..(((((((.((((............)))).))))))).))))))))))))).))))...)))))

Structure

     ---    a             GA       A    accag 
augac   ggga ccgUGCUGGUUUC  ACUCGGU AUAg     a
|||||   |||| |||||||||||||  ||||||| ||||      
ugcug   cccu gGCAUGGUCAAAG  UGGGCCA Uauc     a
     agc    g             -G       C    gaaag 

Annotation confidence High

Genome context

Crem_Contig93: 222856-222943 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35e-1

Mature crm-miR-35e-1-5p

• Accession: MIMAT0056833
• Description: Caenorhabditis remanei crm-miR-35e-1-5p mature miRNA
• Sequence: 14 - UGCUGGUUUCGAACUCGGUAAUA - 36
• Evidence: experimental ; 454 [1]

Mature crm-miR-35e-3p

• Accession: MIMAT0011513
• Description: Caenorhabditis remanei crm-miR-35e-3p mature miRNA
• Sequence: 53 - UCACCGGGUGGAAACUGGUACG - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074