Stem-loop crm-mir-1

Accession

MI0011077

Description

Caenorhabditis remanei crm-mir-1 precursor miRNA

Literature search

1 open access papers mention crm-mir-1
(2 sentences)

Sequence

8876163 reads, 80975.0 reads per million, 9 experiments

gcugugccgagcugCAUACUUCCUUACAUGCCCAUAcuauaucaguaauggauaUGGAAUGUAAAGAAGUAUGUAgaacgguuuugaaaaacggcu
(((((((((..(((((((((((.((((((..(((((((((.......)))).))))).)))))).)))))))))))..))))........))))).

Structure

-     --------    ag           C      GC     -    au 
 gcugu        gccg  cugCAUACUUC UUACAU  CCAUA cuau  c
 |||||        ||||  ||||||||||| ||||||  ||||| ||||  a
 cggca        uggc  gAUGUAUGAAG AAUGUA  GGUau ggua  g
u     aaaaguuu    aa           A      -A     a    au 

Annotation confidence High

Genome context

Crem_Contig9: 244578-244673 [+]

Mature crm-miR-1-5p

• Accession: MIMAT0011565
• Description: Caenorhabditis remanei crm-miR-1-5p mature miRNA
• Sequence: 15 - CAUACUUCCUUACAUGCCCAUA - 36
• Evidence: experimental ; 454 [1]

Mature crm-miR-1-3p

• Accession: MIMAT0011566
• Description: Caenorhabditis remanei crm-miR-1-3p mature miRNA
• Sequence: 55 - UGGAAUGUAAAGAAGUAUGUA - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074