Accession
MI0011192
Description
Pristionchus pacificus
ppc-mir-2240c precursor miRNA
Sequence
1374
reads,
65.0
reads per million, 11 experiments
gguacccuuugcaacucgcuacgucccuuAUCUUCUGAAAUCUCUGUUUCGAUCacuaauuggugugaUCCCAGGGAUUCUCAGUGGAUUagggcaucgagucagcuccauuccc
..........((.(((((....(.((((.((((.((((((((((((....((((((........)))))).)))))))).)))).)))).)))))..)))))..)).........
..........((.(((((....(.((((.((((.((((((((((((....((((((........)))))).)))))))).)))).)))).)))))..)))))..)).........
Structure
gguacccuuu -a cuac u u U - UUUC uaa
gc acucg g cccu AUCU CUGA AAUCUCUG GAUCac u
|| ||||| | |||| |||| |||| |||||||| ||||||
cg ugagc c ggga UAGG GACU UUAGGGAC CUagug u
-cccuuaccu ac --ua - U U C ---C ugg
Annotation confidence
High
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Genome context
ABKE03000048.1: 535739-535853 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-2240c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2240c-5p
| Accession | MIMAT0056946 |
| Description | Pristionchus pacificus ppc-miR-2240c-5p mature miRNA |
| Sequence | 30 - AUCUUCUGAAAUCUCUGUUUCGAUC - 54 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2240c-3p
| Accession | MIMAT0011691 |
| Description | Pristionchus pacificus ppc-miR-2240c-3p mature miRNA |
| Sequence | 69 - UCCCAGGGAUUCUCAGUGGAUU - 90 |
| Evidence |
experimental
454 [1] |
References
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