Stem-loop ppc-mir-38

Accession

MI0011218

Description

Pristionchus pacificus ppc-mir-38 precursor miRNA

Sequence

2513 reads, 213.0 reads per million, 12 experiments

cuucgaucugagcuggugccugcCACAUAGUGACUCCCGGUAACCauccauucgacuuggUCACCGGGAGUUAAUAUGGGACaggccccucagucgga
.(((((.(((((..((.(((((((.((((.(((((((((((.((((...........)))).))))))))))).)))))).)))))))))))))))))

Structure

c     u     cu  u     -  A    G           A    ucca 
 uucga cugag  gg gccug cC CAUA UGACUCCCGGU ACCa    u
 ||||| |||||  || ||||| || |||| ||||||||||| ||||    u
 aggcu gacuc  cc cggaC GG GUAU AUUGAGGGCCA Uggu    c
-     -     --  -     A  -    A           C    ucag 

Annotation confidence High

Genome context

ABKE03000031.1: 559701-559798 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-38

Mature ppc-miR-38-5p

• Accession: MIMAT0056962
• Description: Pristionchus pacificus ppc-miR-38-5p mature miRNA
• Sequence: 24 - CACAUAGUGACUCCCGGUAACC - 45
• Evidence: experimental ; 454 [1]

Mature ppc-miR-38-3p

• Accession: MIMAT0011714
• Description: Pristionchus pacificus ppc-miR-38-3p mature miRNA
• Sequence: 61 - UCACCGGGAGUUAAUAUGGGAC - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074