Stem-loop ppc-mir-2256

Accession

MI0011173

Description

Pristionchus pacificus ppc-mir-2256 precursor miRNA

Sequence

353 reads, 24.0 reads per million, 12 experiments

cgcgauguauuuccugauguuaucuagcuggGUUUGGGCUCGAACAACACCacauuacgguugucguUGUUGUUUGAGUGCAAACCGaaauguacguuggugacuagagcgcgc
((((.(.((.((.(((((((........(.((((((.(((((((((((((.(((.......))).).)))))))))))).)))))).).....))))))).)).)).).)))).

Structure

-    a g  u  c       uaucuagc g      G            - C   uu 
 cgcg u ua uu cugaugu        u gGUUUG GCUCGAACAACA C aca  a
 |||| | || || |||||||        | |||||| |||||||||||| | |||  c
 gcgc a au ag gguugca        a CCAAAC UGAGUUUGUUGU g ugu  g
c    g g  c  u       ---uguaa G      G            u c   ug 

Annotation confidence High

Genome context

ABKE03000104.1: 1684549-1684662 [-]

Mature ppc-miR-2256-5p

• Accession: MIMAT0056939
• Description: Pristionchus pacificus ppc-miR-2256-5p mature miRNA
• Sequence: 32 - GUUUGGGCUCGAACAACACC - 51
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2256-3p

• Accession: MIMAT0011680
• Description: Pristionchus pacificus ppc-miR-2256-3p mature miRNA
• Sequence: 68 - UGUUGUUUGAGUGCAAACCG - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074