Stem-loop cbr-mir-35b-5

Accession

MI0010993

Description

Caenorhabditis briggsae cbr-mir-35b-5 precursor miRNA

Sequence

221737 reads, 18648.0 reads per million, 3 experiments

augaagcguaguuugggucggaccucCGCUGGCUUUUUCCACGGUGAUAcuccaaagcaagugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccacucggaccaccaucauu
((((.(.((.((((((((((((((((.(((((.((((.((.((((((((..(((.......))).)))))))))).)))).))))).)))))))))))))....))).))).)))).

Structure

-    a c  a   ----             C     C    U  A        cu   aa 
 auga g gu guu    ugggucggaccuc GCUGG UUUU CC CGGUGAUA  cca  g
 |||| | || |||    ||||||||||||| ||||| |||| || ||||||||  |||  c
 uacu c ca cag    accuagccugGAG UGGUC AAAG GG GCCACUau  ggu  a
u    a -  c   gcuc             A     A    U  -        -u   ga 

Annotation confidence High

Genome context

chrX: 15372523-15372639 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-5

Mature cbr-miR-35b-5-5p

• Accession: MIMAT0053581
• Description: Caenorhabditis briggsae cbr-miR-35b-5-5p mature miRNA
• Sequence: 27 - CGCUGGCUUUUUCCACGGUGAUA - 49
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35b-3p

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b-3p mature miRNA
• Sequence: 68 - UCACCGGGUGAAAACUGGUAGAG - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074