Stem-loop crm-mir-230

Accession

MI0011068

Description

Caenorhabditis remanei crm-mir-230 precursor miRNA

Sequence

394713 reads, 3957.0 reads per million, 9 experiments

gauguuguaccgauACUUGGUCGACAAUCUAAUAUUAucgguucugccagaagauagUAUUAGUUGUGCGACCAGGAGAcgguauuuaacauca
((((((((((((...((((((((((((.((((((((((((((...)))....))))))))))))))).))))))))...))))))..)))))).

Structure

-      --      auA        -    U           ----   u 
 gauguu  guaccg   CUUGGUCG ACAA CUAAUAUUAuc    ggu  
 ||||||  ||||||   |||||||| |||| |||||||||||    ||| c
 cuacaa  uauggc   GGACCAGC UGUU GAUUAUgauag    ccg  
a      uu      AGA        G    -           aaga   u 

Annotation confidence High

Genome context

Crem_Contig0: 2006530-2006623 [-]

Mature crm-miR-230-5p

• Accession: MIMAT0011547
• Description: Caenorhabditis remanei crm-miR-230-5p mature miRNA
• Sequence: 15 - ACUUGGUCGACAAUCUAAUAUUA - 37
• Evidence: experimental ; 454 [1]

Mature crm-miR-230-3p

• Accession: MIMAT0011548
• Description: Caenorhabditis remanei crm-miR-230-3p mature miRNA
• Sequence: 58 - UAUUAGUUGUGCGACCAGGAGA - 79
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074