Stem-loop crm-mir-83

Accession

MI0011032

Description

Caenorhabditis remanei crm-mir-83 precursor miRNA

Sequence

40704 reads, 352.0 reads per million, 9 experiments

aggcaccacucggaaaaACUGAGUUUAUGUGUGUACUUGAcggccacucgagcaacgaucUAGCACCAUAUAAAUUCAGUAUuuucguggagagagcc
.(((.(..(.((((((.((((((((((((((.((.((.(((((((....).))..)).)).)).)))))))))))))))).)))))).)..)...)))

Structure

a   --a ca u      a              U  A  U  -  --  - a 
 ggc   c  c cggaaa ACUGAGUUUAUGUG GU CU GA cg  gc c c
 |||   |  | |||||| |||||||||||||| || || || ||  || |  
 ccg   g  g gcuuuU UGACUUAAAUAUAC CA GA cu gc  cg g u
-   aga ag u      A              -  C  U  a  aa  a c 

Annotation confidence High

Genome context

Crem_Contig18: 90666-90763 [-]

Mature crm-miR-83-5p

• Accession: MIMAT0056836
• Description: Caenorhabditis remanei crm-miR-83-5p mature miRNA
• Sequence: 18 - ACUGAGUUUAUGUGUGUACUUGA - 40
• Evidence: experimental ; 454 [1]

Mature crm-miR-83-3p

• Accession: MIMAT0011515
• Description: Caenorhabditis remanei crm-miR-83-3p mature miRNA
• Sequence: 61 - UAGCACCAUAUAAAUUCAGUAU - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074