Accession
MI0011139
Description
Pristionchus pacificus
ppc-mir-63c-1 precursor miRNA
Sequence
3742
reads,
215.0
reads per million, 12 experiments
gaaucauaguccaugugggguuCCAUUCGCAUGAGUUUCAUGGAcucgauucauagaucUAUGACACUCAAUGCGAGAUGGGaccucggugggccaaugguuc
(((((((.((((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).)))))))))))))))))..)))))))
(((((((.((((((.(((((((((((((((((((((.(((((((.((........))))))))).)))).)))))).)))))))))))))))))..)))))))
Structure
-a g - - U c gau
gaaucau guccau ugggguuCCAU UCGCAU GAGU UCAUGGA uc u
||||||| |||||| ||||||||||| |||||| |||| ||||||| ||
cuuggua cgggug gcuccaGGGUA AGCGUA CUCA AGUAUcu ag c
ac - G A C - aua
Annotation confidence
High
Do you think this miRNA is real?
Genome context
ABKE03000073.1: 892478-892580 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-63c-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-63c-5p
| Accession | MIMAT0056922 |
| Description | Pristionchus pacificus ppc-miR-63c-5p mature miRNA |
| Sequence | 23 - CCAUUCGCAUGAGUUUCAUGGA - 44 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-63c-3p
| Accession | MIMAT0011651 |
| Description | Pristionchus pacificus ppc-miR-63c-3p mature miRNA |
| Sequence | 60 - UAUGACACUCAAUGCGAGAUGGG - 82 |
| Evidence |
experimental
454 [1] |
References
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