miRBase entry: cbr-mir-74b

Stem-loop cbr-mir-74b


Accession
MI0011017
Description
Caenorhabditis briggsae cbr-mir-74b precursor miRNA mir-74
Gene
family?
RF00830; mir-74


Sequence

gcuacuauucaagccccugccacacuuuUGGACUUCCUUCUCGUUCCCAGCaaaaugcacaguuugcUGGCAAGACUAGGCAGUCCAGauguguggcagcggcaguuuuuggugagu
(((((((.....(((.(((((((((.((((((((.(((..((....((((((((........))))))))...))..))).)))))))).))))))))).)))......)))).)))

Structure
   -    -uucaa   c         u        U   UC  GUUC        aug 
gcu acua      gcc cugccacac uuUGGACU CCU  UC    CCAGCaaa   c
||| ||||      ||| ||||||||| |||||||| |||  ||    ||||||||    
uga uggu      cgg gacggugug aGACCUGA GGA  AG    GGUcguuu   a
   g    uuuuga   c         u        C   UC  -AAC        gac 


Annotation confidence Not enough data
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Genome context
chrX: 4426711-4426827 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cbr-mir-74b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-74b-5p

Accession MIMAT0011501
Description Caenorhabditis briggsae cbr-miR-74b-5p mature miRNA
Sequence 29 - UGGACUUCCUUCUCGUUCCCAGC - 51
Evidence experimental
454 [1]

Mature cbr-miR-74b-3p

Accession MIMAT0011502
Description Caenorhabditis briggsae cbr-miR-74b-3p mature miRNA
Sequence 68 - UGGCAAGACUAGGCAGUCCAG - 88
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074