Stem-loop crm-mir-35a-2

Accession

MI0011066

Description

Caenorhabditis remanei crm-mir-35a-2 precursor miRNA

Sequence

10276 reads, 98.0 reads per million, 9 experiments

gcuggauuggaccuuUGCUGGUUUUCACCUCGGUUAUAcuucaagugugauuaUCACCGGGUGAACAUUGGUGCagguccaauccugca
((.(((((((((((.(((((((.((((((.((((.(((..(((....))).))).)))))))))).))))))).))))))))))).)).

Structure

-  u           u       U      U    U   cu   a 
 gc ggauuggaccu UGCUGGU UUCACC CGGU AUA  uca g
 || ||||||||||| ||||||| |||||| |||| |||  |||  
 cg ccuaaccugga GUGGUUA AAGUGG GCCA Uau  agu u
a  u           C       C      -    C   -u   g 

Annotation confidence High

Genome context

Crem_Contig93: 221979-222067 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35a-2

Mature crm-miR-35a-2-5p

• Accession: MIMAT0056865
• Description: Caenorhabditis remanei crm-miR-35a-2-5p mature miRNA
• Sequence: 16 - UGCUGGUUUUCACCUCGGUUAUA - 38
• Evidence: experimental ; 454 [1]

Mature crm-miR-35a-3p

• Accession: MIMAT0011510
• Description: Caenorhabditis remanei crm-miR-35a-3p mature miRNA
• Sequence: 54 - UCACCGGGUGAACAUUGGUGC - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074