Stem-loop ppc-mir-2241a-3

Accession

MI0011236

Description

Pristionchus pacificus ppc-mir-2241a-3 precursor miRNA

Sequence

213 reads, 13.0 reads per million, 11 experiments

ggagacuaggucuauucgauauugccuugAUCUUCAGGAUCCCUGUCUGAACAcagaaauugagugUUCGCAAGGAUUCCUCAAGAUCagggcuucgagucagcuucccuuuacuucc
((((...(((.((((((((....(((((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))).))....)))...)))).

Structure

-    acu   ---u  -      uauu           C    UC   GUC       aga 
 ggag   agg    cu auucga    gccuugAUCUU AGGA  CCU   UGAACAc   a
 ||||   |||    || ||||||    ||||||||||| ||||  |||   |||||||   a
 cuuc   ucc    ga ugagcu    cgggaCUAGAA UCCU  GGA   GCUUgug   u
c    auu   cuuc  c      ---u           C    UA   -AC       agu 

Annotation confidence High

Genome context

ABKE03000012.1: 5240344-5240461 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-2241a-3

Mature ppc-miR-2241a-5p

• Accession: MIMAT0056973
• Description: Pristionchus pacificus ppc-miR-2241a-5p mature miRNA
• Sequence: 30 - AUCUUCAGGAUCCCUGUCUGAACA - 53
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2241a-3p

• Accession: MIMAT0011731
• Description: Pristionchus pacificus ppc-miR-2241a-3p mature miRNA
• Sequence: 67 - UUCGCAAGGAUUCCUCAAGAUC - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074