Stem-loop ppc-mir-993

Accession

MI0011222

Description

Pristionchus pacificus ppc-mir-993 precursor miRNA

Sequence

12520 reads, 1721.0 reads per million, 12 experiments

gaucucucucccccuugggcuaaccauucugCCCUGUACAGACGUGCUUAUCUcugguauucuauaagcacgaGAAGCUCGACUCUACAGGUCagaacaggccuauucauacuuugauuu
((((...........((((((.....(((((.((((((.((.((.(((..((((((.(........).)).))))))).)).)).)))))).)))))..))))))..........)))).

Structure

-    ucucucccccu      aacca     C      C  A  U   UA    -  g auu 
 gauc           ugggcu     uucug CCUGUA AG CG GCU  UCUc ug u   c
 ||||           ||||||     ||||| |||||| || || |||  |||| || |    
 uuag           auccgg     aagaC GGACAU UC GC CGA  AGag ac a   u
u    -uuucauacuu      ---ac     U      C  A  U   --    c  g aua 

Annotation confidence High

Genome context

ABKE03000122.1: 634088-634207 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-993

Mature ppc-miR-993-5p

• Accession: MIMAT0056964
• Description: Pristionchus pacificus ppc-miR-993-5p mature miRNA
• Sequence: 32 - CCCUGUACAGACGUGCUUAUCU - 53
• Evidence: experimental ; 454 [1]

Mature ppc-miR-993-3p

• Accession: MIMAT0011718
• Description: Pristionchus pacificus ppc-miR-993-3p mature miRNA
• Sequence: 74 - GAAGCUCGACUCUACAGGUC - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074