Stem-loop cbr-mir-35b-8

Accession

MI0010996

Description

Caenorhabditis briggsae cbr-mir-35b-8 precursor miRNA

Sequence

221796 reads, 18652.0 reads per million, 3 experiments

cgaaggucuggaucggaccucCGCUGGUUUUUCCCGCGGUGAUAuuccgaagcaagugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccagucguaccaucg
(((.(((((((((((((((((.((((((((((.((.((((((((..(((.......))).)))))))))).)))))))))).))))))))))))))....))).)))

Structure

   a   ----              C          C  G        uu   aa 
cga ggu    cuggaucggaccuc GCUGGUUUUU CC CGGUGAUA  ccg  g
||| |||    |||||||||||||| |||||||||| || ||||||||  |||  c
gcu cca    gaccuagccugGAG UGGUCAAAAG GG GCCACUau  ggu  a
   a   ugcu              A          U  -        -u   ga 

Annotation confidence High

Genome context

chrX: 15372994-15373100 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-8

Mature cbr-miR-35b-5p

• Accession: MIMAT0053575
• Description: Caenorhabditis briggsae cbr-miR-35b-5p mature miRNA
• Sequence: 22 - CGCUGGUUUUUCCCGCGGUGAUA - 44
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35b-3p

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b-3p mature miRNA
• Sequence: 63 - UCACCGGGUGAAAACUGGUAGAG - 85
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074