Stem-loop ppc-mir-79

Accession

MI0011143

Description

Pristionchus pacificus ppc-mir-79 precursor miRNA

Literature search

1 open access papers mention ppc-mir-79
(1 sentences)

Sequence

5454 reads, 492.0 reads per million, 12 experiments

cggagaaucaacuucuucgCUUUGGUUAUCUUGCUUUCUGAcuaaauguccaagguucAUAAAGCUAGGUUACCAAAGCUaagcggugauuguucc
.(((.(((((.((.(((.((((((((.((((.(((((.(((((..........)).))).))))).)))).)))))))).))).))))))).))).

Structure

c   g     a  u   c        U    U     C   -  aaau 
 gga aauca cu cuu gCUUUGGU AUCU GCUUU UGA cu    g
 ||| ||||| || ||| |||||||| |||| ||||| ||| ||     
 cuu uuagu gg gaa CGAAACCA UGGA CGAAA Acu gg    u
c   g     -  c   U        U    U     U   u  aacc 

Annotation confidence High

Genome context

ABKE03000043.1: 294941-295036 [-]

Mature ppc-miR-79-5p

• Accession: MIMAT0056923
• Description: Pristionchus pacificus ppc-miR-79-5p mature miRNA
• Sequence: 20 - CUUUGGUUAUCUUGCUUUCUGA - 41
• Evidence: experimental ; 454 [1]

Mature ppc-miR-79-3p

• Accession: MIMAT0011652
• Description: Pristionchus pacificus ppc-miR-79-3p mature miRNA
• Sequence: 59 - AUAAAGCUAGGUUACCAAAGCU - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074