Stem-loop ppc-mir-2247

Accession

MI0011243

Description

Pristionchus pacificus ppc-mir-2247 precursor miRNA

Sequence

4103 reads, 293.0 reads per million, 9 experiments

uccucgauuuaccgacUCUCCCCAUUCCUUGUGAUUGCUgacgacuauauaaagUCAUCAUAUUGAAUAGGGAGGCUcaguucaaucgcugac
((..(((((.((.((.((((((.((((..((((((.(((.............))).))))))..)))).)))))).)).))..)))))..)).

Structure

-  cu     -u  c  c      C    CU      U   gacga 
 uc  cgauu  ac ga UCUCCC AUUC  UGUGAU GCU     c
 ||  |||||  || || |||||| ||||  |||||| |||     u
 ag  gcuaa  ug cU GGAGGG UAAG  AUACUA Uga     a
c  uc     cu  a  C      A    UU      C   aauau 

Annotation confidence High

Genome context

ABKE03000107.1: 4533559-4533651 [-]

Mature ppc-miR-2247-5p

• Accession: MIMAT0011735
• Description: Pristionchus pacificus ppc-miR-2247-5p mature miRNA
• Sequence: 17 - UCUCCCCAUUCCUUGUGAUUGCU - 39
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2247-3p

• Accession: MIMAT0056977
• Description: Pristionchus pacificus ppc-miR-2247-3p mature miRNA
• Sequence: 55 - UCAUCAUAUUGAAUAGGGAGGCU - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074