Stem-loop ppc-mir-67

Accession

MI0011216

Description

Pristionchus pacificus ppc-mir-67 precursor miRNA

Sequence

695 reads, 152.0 reads per million, 12 experiments

uaccguaguccacgguucaccucaACGCCCUCUGUGGGUUGUCUGAcucacagugagaucagucACACAACCUCCUAGAGUGUGUCGagguucgugaucuaccgua
(((.((((..(((((...(((((.((((.(((((.(((((((((((((((...)))).))))....)))))))..))))).)))).))))))))))..)))).)))

Structure

   c    uc     uuc     a    C     -U       ----    -    c 
uac guag  cacgg   accuc ACGC CUCUG  GGGUUGU    CUGA cuca  
||| ||||  |||||   ||||| |||| |||||  |||||||    |||| |||| a
aug cauc  gugcu   uggaG UGUG GAGAU  UCCAACA    gacu gagu  
   c    ua     ---     C    U     CC       CAcu    a    g 

Annotation confidence High

Genome context

ABKE03000059.1: 307331-307436 [+]

Mature ppc-miR-67-5p

• Accession: MIMAT0056961
• Description: Pristionchus pacificus ppc-miR-67-5p mature miRNA
• Sequence: 25 - ACGCCCUCUGUGGGUUGUCUGA - 46
• Evidence: experimental ; 454 [1]

Mature ppc-miR-67-3p

• Accession: MIMAT0011713
• Description: Pristionchus pacificus ppc-miR-67-3p mature miRNA
• Sequence: 65 - ACACAACCUCCUAGAGUGUGUCG - 87
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074