Stem-loop ppc-mir-2232-2

Accession

MI0011153

Description

Pristionchus pacificus ppc-mir-2232-2 precursor miRNA mir-2232

Gene
family

RF03276; mir-2232

Sequence

317923 reads, 20895.0 reads per million, 12 experiments

guucgccuaaucgucgcccagcucgggagCGGCUCGCCAUGGUCGCCAUUGAccgauuugaugacggaucUAUGACACCUGGGCGAACUGUCCccugagugggccaaggguugggcagcc
(((.((((((((.(.(((((.((((((.((((.(((((..(((.(.(((.(((((.((....))))).)).))).))))..))))).)))).))).))))))))..).))))))))))).

Structure

-   c        g -c     g   -   a    C     AU   C C   U  -   a  u 
 guu gccuaauc u  gccca cuc ggg gCGG UCGCC  GGU G CAU GA ccg uu g
 ||| |||||||| |  ||||| ||| ||| |||| |||||  ||| | ||| || ||| ||  
 cga cggguugg a  cgggu gag ccC UGUC AGCGG  CCA C GUA cu ggc ag a
c   -        g ac     -   u   C    A     GU   - A   U  a   -  u 

Annotation confidence Not enough data

Genome context

ABKE03000060.1: 1495630-1495749 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2232-2

Mature ppc-miR-2232-2-5p

• Accession: MIMAT0056915
• Description: Pristionchus pacificus ppc-miR-2232-2-5p mature miRNA
• Sequence: 30 - CGGCUCGCCAUGGUCGCCAUUGA - 52
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2232-3p

• Accession: MIMAT0011643
• Description: Pristionchus pacificus ppc-miR-2232-3p mature miRNA
• Sequence: 71 - UAUGACACCUGGGCGAACUGUCC - 93
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074