Stem-loop ppc-mir-45

Accession

MI0011128

Description

Pristionchus pacificus ppc-mir-45 precursor miRNA

Sequence

206805 reads, 20147.0 reads per million, 12 experiments

gagucgcagccccgcuCUGGAUGUGUGAUCUUGGUCGUAUccgcgcaaaugcucaaugauuaUGACUAGAGACACAUUCAGCUuggggccggcucu
((((((..((((((..((((((((((..(((.(((((((((.(.((....)).)...)).)))))))))).))))))))))..)))))))))))).

Structure

-      ca      cu          GA   U       -  --c c  a 
 gagucg  gccccg  CUGGAUGUGU  UCU GGUCGUA Uc   g gc a
 ||||||  ||||||  ||||||||||  ||| ||||||| ||   | ||  
 cucggc  cggggu  GACUUACACA  AGA UCAGUau ag   c cg a
u      --      UC          -G   -       u  uaa u  u 

Annotation confidence High

Genome context

ABKE03000123.1: 6561375-6561470 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-45

Mature ppc-miR-45-5p

• Accession: MIMAT0056912
• Description: Pristionchus pacificus ppc-miR-45-5p mature miRNA
• Sequence: 17 - CUGGAUGUGUGAUCUUGGUCGUAU - 40
• Evidence: experimental ; 454 [1]

Mature ppc-miR-45-3p

• Accession: MIMAT0011640
• Description: Pristionchus pacificus ppc-miR-45-3p mature miRNA
• Sequence: 63 - UGACUAGAGACACAUUCAGCU - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074