Stem-loop ppc-mir-279

Accession

MI0011244

Description

Pristionchus pacificus ppc-mir-279 precursor miRNA

Literature search

2 open access papers mention ppc-mir-279
(6 sentences)

Sequence

40039 reads, 2829.0 reads per million, 12 experiments

augugcugugucguguucccugcUGGGUAUGUGUCUCAGUCAUGCUauccuugucguuguacccaUGACUAGAUCCAUACUCAGCUgggcuuggcguugugcgu
((((((..(((((....(((.((((((((((.((((.(((((((.....(........)....))))))))))).)))))))))).)))..)))))..))))))

Structure

      ug     uguu   u          U    C       CUauc uug 
augugc  ugucg    ccc gcUGGGUAUG GUCU AGUCAUG     c   u
||||||  |||||    ||| |||||||||| |||| |||||||     |    
ugcgug  gcggu    ggg CGACUCAUAC UAGA UCAGUac     g   c
      uu     --uc   U          C    -       -ccau uug 

Annotation confidence High

Genome context

ABKE03000053.1: 567705-567808 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-279

Mature ppc-miR-279-5p

• Accession: MIMAT0056978
• Description: Pristionchus pacificus ppc-miR-279-5p mature miRNA
• Sequence: 24 - UGGGUAUGUGUCUCAGUCAUGCU - 46
• Evidence: experimental ; 454 [1]

Mature ppc-miR-279-3p

• Accession: MIMAT0011736
• Description: Pristionchus pacificus ppc-miR-279-3p mature miRNA
• Sequence: 66 - UGACUAGAUCCAUACUCAGCU - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074