Accession
MI0011193
Description
Pristionchus pacificus
ppc-mir-2238a-1 precursor miRNA
Sequence
135
reads,
12.0
reads per million, 11 experiments
cgguuuaugguaacuagucauuccucuuucccuUUUCACUCAUCUCGUCAAUCGAUaauugaauuucgAAUGACAGAUCAGUGCGCGAGaaggaagacuagcuuccguaauacacugg
((((((((((...((((((.(((((.((((......((((.((((.((((.((((..........)))).)))))))).))))...)))))))))))))))...))))))...)))).
((((((((((...((((((.(((((.((((......((((.((((.((((.((((..........)))).)))))))).))))...)))))))))))))))...))))))...)))).
Structure
- --- uaa a c ccuUUU C C A Uaau cggu uuaugg cuaguc uuccu uuuc CACU AUCU GUCA UCGA u |||| |||||| |||||| ||||| |||| |||| |||| |||| |||| guca aaugcc gaucag aagga aGAG GUGA UAGA CAGU Agcu g g cau uuc - - ---CGC C - A uuaa
Annotation confidence
Not enough data
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Genome context
ABKE03000048.1: 448529-448646 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-2238a-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-2238a-1-5p
| Accession | MIMAT0056948 |
| Description | Pristionchus pacificus ppc-miR-2238a-1-5p mature miRNA |
| Sequence | 34 - UUUCACUCAUCUCGUCAAUCGAU - 56 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-2238a-3p
| Accession | MIMAT0011692 |
| Description | Pristionchus pacificus ppc-miR-2238a-3p mature miRNA |
| Sequence | 69 - AAUGACAGAUCAGUGCGCGAG - 89 |
| Evidence |
experimental
454 [1] |
References
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