Stem-loop ppc-mir-2238a-4

Accession

MI0011224

Description

Pristionchus pacificus ppc-mir-2238a-4 precursor miRNA

Sequence

caaugcuuucugguaucuagucgauccucuuucccauucacucuucucgucagucgaugauugaauaucgAAUGACAGAUCAGUGCGCGAGaaggaagacuagcuuccgugaugguguuu
.((((((.(((((...((((((..((((.((((.(...((((..(((.((((.((((((......)))))).)))))))..)))).).)))))))).))))))...))).)).)))))).

Structure

c      u  -   uau      ga    c    c auu    cu   c    g      au 
 aaugcu uc ugg   cuaguc  uccu uuuc c   cacu  ucu guca ucgaug  u
 |||||| || |||   ||||||  |||| |||| |   ||||  ||| |||| ||||||   
 uugugg ag gcc   gaucag  agga aGAG G   GUGA  AGA CAGU Agcuau  g
u      u  u   uuc      -a    -    C --C    CU   -    A      aa 

Annotation confidence Not enough data

Genome context

ABKE03000048.1: 194478-194597 [-]

Mature ppc-miR-2238a

• Accession: MIMAT0011692
• Description: Pristionchus pacificus ppc-miR-2238a mature miRNA
• Sequence: 71 - AAUGACAGAUCAGUGCGCGAG - 91
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074