Stem-loop ppc-mir-2232-1

Accession

MI0011131

Description

Pristionchus pacificus ppc-mir-2232-1 precursor miRNA mir-2232

Gene
family

RF03276; mir-2232

Sequence

319045 reads, 21019.0 reads per million, 12 experiments

cugagagacccauccgauccugaACGGUUCCCUGGUGGCAUGgucgauacuaaugagcgaacUAUGACACCUGGGCGAACUGUCCaggcgggguuuccaa
.((.(((((((...((..((((.((((((((((((((.((((((((...........)).)))))).)))).))).))))))).))))))))))))))).

Structure

c  a       auc  au    a       -   -    G      -  auac 
 ug gagaccc   cg  ccug ACGGUUC CCU GGUG CAUGgu cg    u
 || |||||||   ||  |||| ||||||| ||| |||| |||||| ||    a
 ac cuuuggg   gc  ggaC UGUCAAG GGG CCAC GUAUca gc    a
a  -       ---  --    C       C   U    A      a  gagu 

Annotation confidence High

Genome context

ABKE03000119.1: 562163-562262 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2232-1

Mature ppc-miR-2232-1-5p

• Accession: MIMAT0056914
• Description: Pristionchus pacificus ppc-miR-2232-1-5p mature miRNA
• Sequence: 24 - ACGGUUCCCUGGUGGCAUG - 42
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2232-3p

• Accession: MIMAT0011643
• Description: Pristionchus pacificus ppc-miR-2232-3p mature miRNA
• Sequence: 63 - UAUGACACCUGGGCGAACUGUCC - 85
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074