Stem-loop ppc-mir-9

Accession

MI0011248

Description

Pristionchus pacificus ppc-mir-9 precursor miRNA

Literature search

1 open access papers mention ppc-mir-9
(1 sentences)

Sequence

117849 reads, 10907.0 reads per million, 12 experiments

uuccuucaaugggacagucauuaucgucUCUUUGGUUAUCUAGCUGUAUGauuugaaauguaaaucAUAAAGCUGGAAAACUGAAGGAAcgaugugucucaugga
.(((....((((((((.....((((((.(((((((((.(((((((.(((((((((.....))))))))).))))))).))))))))).)))))))))))))))))

Structure

u   uuca        gucau      c         A       G         a 
 ucc    augggaca     uaucgu UCUUUGGUU UCUAGCU UAUGauuug a
 |||    ||||||||     |||||| ||||||||| ||||||| ||||||||| a
 agg    uacucugu     guagcA GGAAGUCAA AGGUCGA AUAcuaaau u
-   ----        -----      A         A       A         g 

Annotation confidence High

Genome context

ABKE03000043.1: 208379-208483 [+]

Mature ppc-miR-9-5p

• Accession: MIMAT0011737
• Description: Pristionchus pacificus ppc-miR-9-5p mature miRNA
• Sequence: 29 - UCUUUGGUUAUCUAGCUGUAUG - 50
• Evidence: experimental ; 454 [1]

Mature ppc-miR-9-3p

• Accession: MIMAT0056979
• Description: Pristionchus pacificus ppc-miR-9-3p mature miRNA
• Sequence: 67 - AUAAAGCUGGAAAACUGAAGGAA - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074