Stem-loop crm-mir-2230

Accession

MI0011122

Description

Caenorhabditis remanei crm-mir-2230 precursor miRNA

Literature search

1 open access papers mention crm-mir-2230
(2 sentences)

Sequence

322683 reads, 2908.0 reads per million, 9 experiments

cacucaauuugaguaggaagaacuucAGUCUGUGAUACUGUGGUAGCAAucgguacaguagucuugCAACCCAAUGUCACGGACUGAAGuugaaaacuugaaagug
((((...(((((((......(((((((((((((((((.((.(((.((((.(.........)..)))).))))).)))))))))))))))))....)))))))))))

Structure

    caa       aggaag                 C  U   A    -u ggu 
cacu   uuugagu      aacuucAGUCUGUGAUA UG GGU GCAA  c   a
||||   |||||||      ||||||||||||||||| || ||| ||||  |   c
guga   aaguuca      uuGAAGUCAGGCACUGU AC CCA Cguu  g   a
    ---       --aaag                 A  -   A    cu aug 

Annotation confidence High

Genome context

Crem_Contig74: 222357-222462 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from crm-mir-2230

Mature crm-miR-2230-5p

• Accession: MIMAT0011629
• Description: Caenorhabditis remanei crm-miR-2230-5p mature miRNA
• Sequence: 27 - AGUCUGUGAUACUGUGGUAGCAA - 49
• Evidence: experimental ; 454 [1]

Mature crm-miR-2230-3p

• Accession: MIMAT0011630
• Description: Caenorhabditis remanei crm-miR-2230-3p mature miRNA
• Sequence: 67 - CAACCCAAUGUCACGGACUGAAG - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074