Stem-loop cbr-mir-54b

Accession

MI0011012

Description

Caenorhabditis briggsae cbr-mir-54b precursor miRNA mir-54

Gene
family

RF04082; mir-54

Sequence

7882 reads, 756.0 reads per million, 3 experiments

gagcacgagcugaucuuugacUCGAACCUGGACAUCGUUUUGUACAcgaagucaagcugcugUACCCGUGAUUCCAUGUAUCGAGucaacgaucgccuuuaaaaaugugcuu
(((((((((.(((((.(((((((((((.((((.((((....(((((.(.(((...))).))))))...)))))))).)).))))))))).))))).))).......))))))

Structure

      -------   c     u         -  C    C    UUUU     c a   c 
gagcac       gag ugauc uugacUCGA AC UGGA AUCG    GUACA g agu  
||||||       ||| ||||| ||||||||| || |||| ||||    ||||| | ||| a
uucgug       uuc gcuag aacuGAGCU UG ACCU UAGU    CAUgu c ucg  
      uaaaaau   c     c         A  U    -    -GCC     - g   a 

Annotation confidence High

Genome context

chrX: 16963589-16963700 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbr-mir-54b

Mature cbr-miR-54b-5p

• Accession: MIMAT0053584
• Description: Caenorhabditis briggsae cbr-miR-54b-5p mature miRNA
• Sequence: 22 - UCGAACCUGGACAUCGUUUUGUACA - 46
• Evidence: experimental ; 454 [1]

Mature cbr-miR-54b-3p

• Accession: MIMAT0011494
• Description: Caenorhabditis briggsae cbr-miR-54b-3p mature miRNA
• Sequence: 63 - UACCCGUGAUUCCAUGUAUCGAG - 85
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074