Stem-loop ppc-mir-239-1

Accession

MI0011134

Description

Pristionchus pacificus ppc-mir-239-1 precursor miRNA mir-239

Gene
family

RF00713; mir-239

Sequence

13735 reads, 1091.0 reads per million, 12 experiments

aucauaacgcacauuacaugccuugUUUGUACUAGGCUAAGGAAUUacgauauauugaagcgauaAUUCCUGUAGUCCUGUGCGAUCCaggcuguggaugcgauga
.((((..((((..(((((.((((.(.((((((..(((((((((((((((...........)).)))))))).)))))..)))))).).))))))))).))))))))

Structure

a    aa    ca     u    u U      UA     -        -  auau 
 ucau  cgca  uuaca gccu g UUGUAC  GGCUA AGGAAUUa cg    a
 ||||  ||||  ||||| |||| | ||||||  ||||| |||||||| ||    u
 agua  gcgu  ggugu cgga C AGCGUG  CUGAU UCCUUAau gc    u
-    --    -a     -    C U      UC     G        a  gaag 

Annotation confidence High

Genome context

ABKE03000123.1: 3199255-3199360 [+]

Mature ppc-miR-239-5p

• Accession: MIMAT0011646
• Description: Pristionchus pacificus ppc-miR-239-5p mature miRNA
• Sequence: 26 - UUUGUACUAGGCUAAGGAAUU - 46
• Evidence: experimental ; 454 [1]

Mature ppc-miR-239-1-3p

• Accession: MIMAT0056917
• Description: Pristionchus pacificus ppc-miR-239-1-3p mature miRNA
• Sequence: 66 - AUUCCUGUAGUCCUGUGCGAUCC - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074