miRBase entry: cbr-mir-35b-2

Stem-loop cbr-mir-35b-2


Accession
MI0010990
Description
Caenorhabditis briggsae cbr-mir-35b-2 precursor miRNA


Sequence

ucugauagucuggaucgaaucuuugcugguuuccucugcggugauauuccaaaugaagugcuuaUCACCGGGUGAAAACUGGUAGAGauccgaucccgucgga
((((((.....((((((.((((((((((((((.(.((.((((((((................)))))))))).).)))))))))))))).)))))).))))))

Structure
      agucu      a              c u  g        uuccaaa 
ucugau     ggaucg aucuuugcugguuu c cu cggugaua       u
||||||     |||||| |||||||||||||| | || ||||||||        
aggcug     ccuagc uaGAGAUGGUCAAA G GG GCCACUau       g
      ----c      c              A U  -        ucgugaa 


Annotation confidence Not enough data
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Genome context
chrX: 15372023-15372125 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35b

Accession MIMAT0011483
Description Caenorhabditis briggsae cbr-miR-35b mature miRNA
Sequence 65 - UCACCGGGUGAAAACUGGUAGAG - 87
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074