Stem-loop ppc-mir-2241a-1

Accession

MI0011246

Description

Pristionchus pacificus ppc-mir-2241a-1 precursor miRNA

Sequence

212 reads, 13.0 reads per million, 11 experiments

auucgauacgccucugAUCUUCAGGAUCCCUGUCUGAACAccgaaauugagugUUCGCAAGGAUUCCUCAAGAUCagggccucgaauc
((((((...(((.((((((((.((((..(((...(((((((((....)).)))))))..)))..)))).))))))))))).)))))).

Structure

-      uac   u        C    UC   GUC       -  a 
 auucga   gcc cugAUCUU AGGA  CCU   UGAACAc cg a
 ||||||   ||| |||||||| ||||  |||   ||||||| ||  
 uaagcu   cgg gaCUAGAA UCCU  GGA   GCUUgug gu a
c      --c   -        C    UA   -AC       a  u 

Annotation confidence High

Genome context

ABKE03000012.1: 4725724-4725811 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-2241a-1

Mature ppc-miR-2241a-5p

• Accession: MIMAT0056973
• Description: Pristionchus pacificus ppc-miR-2241a-5p mature miRNA
• Sequence: 17 - AUCUUCAGGAUCCCUGUCUGAACA - 40
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2241a-3p

• Accession: MIMAT0011731
• Description: Pristionchus pacificus ppc-miR-2241a-3p mature miRNA
• Sequence: 54 - UUCGCAAGGAUUCCUCAAGAUC - 75
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074