Accession
MI0011199
Description
Pristionchus pacificus
ppc-mir-55b precursor miRNA
Sequence
14184
reads,
1706.0
reads per million, 12 experiments
gcacagcuaaguuuCGACGUAUAACGUGCAGGUCGCccuauaugaaauggucgcAACCCGUAACGUUAUAUUUCGGaacucuugugagugca
((((.((..((((((((.(((((((((((.(((.((.((((.....))))..)).))).)).))))))))).))))))))...))..)))).
((((.((..((((((((.(((((((((((.(((.((.((((.....))))..)).))).)).))))))))).))))))))...))..)))).
Structure
- -a -ua C - A C -c a gcac gc aguuuCGA GUAUAACGU GC GGU GC cuau u |||| || |||||||| ||||||||| || ||| || |||| g cgug ug ucaaGGCU UAUAUUGCA UG CCA cg ggua a a ag uuc U A C A cu a
Annotation confidence
High
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Genome context
ABKE03000107.1: 3735291-3735382 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-55b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppc-miR-55b-5p
| Accession | MIMAT0056952 |
| Description | Pristionchus pacificus ppc-miR-55b-5p mature miRNA |
| Sequence | 15 - CGACGUAUAACGUGCAGGUCGC - 36 |
| Evidence |
experimental
454 [1] |
Mature ppc-miR-55b-3p
| Accession | MIMAT0011696 |
| Description | Pristionchus pacificus ppc-miR-55b-3p mature miRNA |
| Sequence | 55 - AACCCGUAACGUUAUAUUUCGG - 76 |
| Evidence |
experimental
454 [1] |
References
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