Stem-loop crm-mir-231

Accession

MI0011048

Description

Caenorhabditis remanei crm-mir-231 precursor miRNA

Sequence

91585 reads, 789.0 reads per million, 9 experiments

aaucgagcaccccgauguuguuCUGACUGUUUCCAUAGCUUAUAuugucucaaaaugcauaUAAGCUCGUGAACAACAGGCAGGacaacuggucuuuuuggugugcauuuugau
.(((((((((.((((.(((((((((.(((((..((((((((((((.((........))))))))))).)))...))))).)))))))))........)))).))))...)))))

Structure

a     ---    c    -------u         A     -UC   -         u  cuc 
 aucga   gcac ccga        guuguuCUG CUGUU   CAU AGCUUAUAu gu   a
 |||||   |||| ||||        ||||||||| |||||   ||| ||||||||| ||    
 uaguu   cgug gguu        caacaGGAC GACAA   GUG UCGAAUaua cg   a
-     uua    u    uuucuggu         G     CAA   C         -  uaa 

Annotation confidence High

Genome context

Crem_Contig80: 211526-211639 [+]

Mature crm-miR-231-5p

• Accession: MIMAT0056851
• Description: Caenorhabditis remanei crm-miR-231-5p mature miRNA
• Sequence: 23 - CUGACUGUUUCCAUAGCUUAUA - 44
• Evidence: experimental ; 454 [1]

Mature crm-miR-231-3p

• Accession: MIMAT0011530
• Description: Caenorhabditis remanei crm-miR-231-3p mature miRNA
• Sequence: 62 - UAAGCUCGUGAACAACAGGCAGG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074