Stem-loop ppc-mir-239-2

Accession

MI0011146

Description

Pristionchus pacificus ppc-mir-239-2 precursor miRNA mir-239

Gene
family

RF00713; mir-239

Sequence

10510 reads, 854.0 reads per million, 12 experiments

ggaagcacuuacucaugcaugccuugUUUGUACUAGGCUAAGGAAUUacgucauauugaagcguuaaUUCCUCUAGUCCCGUGCAAUCCaggcuaugaaugcaaugcugcgaucc
(((.(((......(((.(((((((.(.((((((..((((((((((((((((.........))).)))))))).)))))..)))))).).)))).))).)))......)))..)))

Structure

   -a   cuuacu   g   -    u U      UA     -        -   cau 
gga  gca      cau cau gccu g UUGUAC  GGCUA AGGAAUUa cgu   a
|||  |||      ||| ||| |||| | ||||||  ||||| |||||||| |||   u
ccu  cgu      gua gua cgga C AACGUG  CUGAU UCCUUaau gcg   u
   ag   cguaac   a   u    C U      CC     C        u   aag 

Annotation confidence Not enough data

Genome context

ABKE03000005.1: 1277953-1278067 [+]

Mature ppc-miR-239-5p

• Accession: MIMAT0011646
• Description: Pristionchus pacificus ppc-miR-239-5p mature miRNA
• Sequence: 27 - UUUGUACUAGGCUAAGGAAUU - 47
• Evidence: experimental ; 454 [1]

Mature ppc-miR-239-2-3p

• Accession: MIMAT0056918
• Description: Pristionchus pacificus ppc-miR-239-2-3p mature miRNA
• Sequence: 68 - UUCCUCUAGUCCCGUGCAAUCC - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074