Stem-loop ppc-mir-37

Accession

MI0011135

Description

Pristionchus pacificus ppc-mir-37 precursor miRNA

Sequence

2217 reads, 292.0 reads per million, 12 experiments

ucugagucccuucgauCGCCUCUGAUCACUACGAUGAAAcugagauaacgaguuuUCACCGGGUGAACAGAAGCUGUugaagauaucggaa
(((((....(((((((.((.((((.(((((.((.(((((((.........)).))))).))))))).)))).)).)))))))...))))).

Structure

-     gucc       C  C    A     A  A     -  gag 
 ucuga    cuucgau GC UCUG UCACU CG UGAAA cu   a
 |||||    ||||||| || |||| ||||| || ||||| ||   u
 aggcu    gaaguUG CG AGAC AGUGG GC ACUuu ga   a
a     -aua       U  A    A     -  C     u  gca 

Annotation confidence High

Genome context

ABKE03000123.1: 8322295-8322385 [-]

Mature ppc-miR-37-5p

• Accession: MIMAT0056919
• Description: Pristionchus pacificus ppc-miR-37-5p mature miRNA
• Sequence: 17 - CGCCUCUGAUCACUACGAUGAAA - 39
• Evidence: experimental ; 454 [1]

Mature ppc-miR-37-3p

• Accession: MIMAT0011647
• Description: Pristionchus pacificus ppc-miR-37-3p mature miRNA
• Sequence: 56 - UCACCGGGUGAACAGAAGCUGU - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074