Stem-loop ppc-mir-2262

Accession

MI0011188

Description

Pristionchus pacificus ppc-mir-2262 precursor miRNA

Sequence

1934 reads, 150.0 reads per million, 12 experiments

gaauaaauguuuugacccucgaaugacgagUACCCGAUGUCCAGUGGUACCUUcuguauugagaagaAGGACUCCUUUACAUCGGGCACCUGucaaugaguagcguuaauucu
((((.((((((......((((..(((((.((.((((((((..((.(((.((((((.........))))))))).))..)))))))).)).))))).)))).)))))).)))).

Structure

-    a      uugacc    aa     a  A        CC  U   A      gua 
 gaau aauguu      cucg  ugacg gU CCCGAUGU  AG GGU CCUUcu   u
 |||| ||||||      ||||  ||||| || ||||||||  || ||| ||||||   u
 cuua uugcga      gagu  acuGU CA GGGCUACA  UC UCA GGAaga   g
u    a      -----u    -a     C  C        UU  C   -      aga 

Annotation confidence High

Genome context

ABKE03000005.1: 1337907-1338019 [-]

Mature ppc-miR-2262-5p

• Accession: MIMAT0011688
• Description: Pristionchus pacificus ppc-miR-2262-5p mature miRNA
• Sequence: 31 - UACCCGAUGUCCAGUGGUACCUU - 53
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2262-3p

• Accession: MIMAT0056943
• Description: Pristionchus pacificus ppc-miR-2262-3p mature miRNA
• Sequence: 68 - AGGACUCCUUUACAUCGGGCACCUG - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074