Stem-loop crm-mir-35e-2

Accession

MI0011031

Description

Caenorhabditis remanei crm-mir-35e-2 precursor miRNA

Sequence

43620 reads, 427.0 reads per million, 9 experiments

cugacgaggggaaccgUGCUGGUUUCGACCUCGGUAAUAgguccauauaugagaagaaccuaUCACCGGGUGGAAACUGGUACGgguccccgagucag
(((((..(((((.(((((((((((((.(((.((((.((((((.(...........).)))))).))))))).))))))))))))).)))))..)))))

Structure

     ga     a             G   U    A      c auau 
cugac  gggga ccgUGCUGGUUUC ACC CGGU AUAggu c    a
|||||  ||||| ||||||||||||| ||| |||| |||||| |    u
gacug  ccccu gGCAUGGUCAAAG UGG GCCA Uaucca g    g
     ag     g             G   -    C      a aaga 

Annotation confidence High

Genome context

Crem_Contig93: 223699-223796 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35e-2

Mature crm-miR-35e-2-5p

• Accession: MIMAT0056834
• Description: Caenorhabditis remanei crm-miR-35e-2-5p mature miRNA
• Sequence: 17 - UGCUGGUUUCGACCUCGGUAAUA - 39
• Evidence: experimental ; 454 [1]

Mature crm-miR-35e-3p

• Accession: MIMAT0011513
• Description: Caenorhabditis remanei crm-miR-35e-3p mature miRNA
• Sequence: 63 - UCACCGGGUGGAAACUGGUACG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074