Stem-loop crm-mir-60

Accession

MI0011075

Description

Caenorhabditis remanei crm-mir-60 precursor miRNA

Sequence

668086 reads, 5663.0 reads per million, 9 experiments

aaaccgcuuguucuugAGCUAGAAAGGUGACAUAAAAUcauguauaacaacgcgaUAUUAUGCACAUUUUCUAGACCAagacaugauuuaucgguu
.((((((.(((.((((..(((((((((((.(((((.(((.(((......))).))).)))))))).))))))))..))))))).)......)))))

Structure

a     ------ u   u    AG        -   A     A   a   au 
 aaccg      c ugu cuug  CUAGAAAG GUG CAUAA AUc ugu  a
 |||||      | ||| ||||  |||||||| ||| ||||| ||| |||   
 uuggc      g aca gaAC  GAUCUUUU CAC GUAUU Uag gca  a
-     uauuua u   -    CA        A   -     A   c   ac 

Annotation confidence High

Genome context

Crem_Contig6: 1681930-1682025 [+]

Mature crm-miR-60-5p

• Accession: MIMAT0011561
• Description: Caenorhabditis remanei crm-miR-60-5p mature miRNA
• Sequence: 17 - AGCUAGAAAGGUGACAUAAAAU - 38
• Evidence: experimental ; 454 [1]

Mature crm-miR-60-3p

• Accession: MIMAT0011562
• Description: Caenorhabditis remanei crm-miR-60-3p mature miRNA
• Sequence: 56 - UAUUAUGCACAUUUUCUAGACCA - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074