Stem-loop ppc-mir-2241a-4

Accession

MI0011238

Description

Pristionchus pacificus ppc-mir-2241a-4 precursor miRNA

Sequence

213 reads, 13.0 reads per million, 11 experiments

gcucuauucgauauugccuugAUCUUCAGGAUCCCUGUCUGAACAcagaaauugagugUUCGCAAGGAUUCCUCAAGAUCagggcuucgagucagcu
(((..((((((....(((((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))).))).

Structure

-   cu      uauu           C    UC   GUC       aga 
 gcu  auucga    gccuugAUCUU AGGA  CCU   UGAACAc   a
 |||  ||||||    ||||||||||| ||||  |||   |||||||   a
 cga  ugagcu    cgggaCUAGAA UCCU  GGA   GCUUgug   u
u   -c      ---u           C    UA   -AC       agu 

Annotation confidence High

Genome context

ABKE03000012.1: 5240628-5240724 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-2241a-4

Mature ppc-miR-2241a-5p

• Accession: MIMAT0056973
• Description: Pristionchus pacificus ppc-miR-2241a-5p mature miRNA
• Sequence: 22 - AUCUUCAGGAUCCCUGUCUGAACA - 45
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2241a-3p

• Accession: MIMAT0011731
• Description: Pristionchus pacificus ppc-miR-2241a-3p mature miRNA
• Sequence: 59 - UUCGCAAGGAUUCCUCAAGAUC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074