Stem-loop ppc-mir-86

Accession

MI0011155

Description

Pristionchus pacificus ppc-mir-86 precursor miRNA mir-86

Gene
family

RF00808; mir-86

Literature search

2 open access papers mention ppc-mir-86
(2 sentences)

Sequence

10895 reads, 1361.0 reads per million, 12 experiments

ccuugaucggccaugccggcUAAGUGAAUUUCUUGCCACAGUCuuagccuaauucacaaggCUGGGCAAUACUUUCGCUUGCGCcggcuagaagaacggugaggg
((((.((((..(..((((((((((((((....(((((.(((((((............))))))))))))....)))))))).)))))).....)..)))).))))

Structure

    g    gc ---au      -        UUUC     A       agccu 
ccuu aucg  c     gccggc UAAGUGAA    UUGCC CAGUCuu     a
|||| ||||  |     |||||| ||||||||    ||||| |||||||      
ggga uggc  g     cggcCG GUUCGCUU    AACGG GUCggaa     a
    g    aa aagau      C        UCAU     -       cacuu 

Annotation confidence High

Genome context

ABKE03000122.1: 227947-228051 [-]

Mature ppc-miR-86-5p

• Accession: MIMAT0011662
• Description: Pristionchus pacificus ppc-miR-86-5p mature miRNA
• Sequence: 21 - UAAGUGAAUUUCUUGCCACAGUC - 43
• Evidence: experimental ; 454 [1]

Mature ppc-miR-86-3p

• Accession: MIMAT0056930
• Description: Pristionchus pacificus ppc-miR-86-3p mature miRNA
• Sequence: 62 - CUGGGCAAUACUUUCGCUUGCGC - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074