Stem-loop crm-mir-788

Accession

MI0011106

Description

Caenorhabditis remanei crm-mir-788 precursor miRNA

Sequence

113912 reads, 1020.0 reads per million, 9 experiments

ggccugaaacuuacgucUCCGCUUCUAACUUCCAUUUGCAGaguucaucaauucucuGGAAAUGGAUUAGAACCGUGAAAuguuaguaugauggucc
(((((.(.(((.((((.((((.((((((..(((((((.(((((..........))))).))))))))))))).)).)).)))).))).).).)))).

Structure

-    - g a   u    c  -  C      CU       G     uuca 
 ggcc u a acu acgu UC CG UUCUAA  UCCAUUU CAGag    u
 |||| | | ||| |||| || || ||||||  ||||||| |||||     
 cugg a u uga uguA AG GC AAGAUU  AGGUAAA Gucuc    c
c    u g a   u    A  U  C      --       G     uuaa 

Annotation confidence High

Genome context

Crem_Contig72: 198587-198683 [-]

Mature crm-miR-788-5p

• Accession: MIMAT0011608
• Description: Caenorhabditis remanei crm-miR-788-5p mature miRNA
• Sequence: 18 - UCCGCUUCUAACUUCCAUUUGCAG - 41
• Evidence: experimental ; 454 [1]

Mature crm-miR-788-3p

• Accession: MIMAT0056875
• Description: Caenorhabditis remanei crm-miR-788-3p mature miRNA
• Sequence: 58 - GGAAAUGGAUUAGAACCGUGAAA - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074