Stem-loop cbr-mir-54c

Accession

MI0011013

Description

Caenorhabditis briggsae cbr-mir-54c precursor miRNA mir-54

Gene
family

RF04082; mir-54

Sequence

33597 reads, 3150.0 reads per million, 3 experiments

cgugagccgauccuugacuGGAACUUGGAUAUCGUUCGUAUACAgcaaaauaguccugUACCCGUACUUCCAACUUCCAAAucaaggaucgucgug
.......((((((((((.(((((.(((((...((...(((((..((......))..))))).))....))))).)))))..)))))))))).....

Structure

cgugagc          -c     C     -UAU  UUC     CA  aa 
       cgauccuuga  uGGAA UUGGA    CG   GUAUA  gc  a
       ||||||||||  ||||| |||||    ||   |||||  ||   
       gcuaggaacu  ACCUU AACCU    GC   CAUgu  ug  a
--gugcu          AA     C     UCAU  --C     cc  au 

Annotation confidence High

Genome context

chrX: 16963921-16964016 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cbr-mir-54c

Mature cbr-miR-54c-5p

• Accession: MIMAT0053585
• Description: Caenorhabditis briggsae cbr-miR-54c-5p mature miRNA
• Sequence: 20 - GGAACUUGGAUAUCGUUCGUAUACA - 44
• Evidence: experimental ; 454 [1]

Mature cbr-miR-54c-3p

• Accession: MIMAT0011495
• Description: Caenorhabditis briggsae cbr-miR-54c-3p mature miRNA
• Sequence: 59 - UACCCGUACUUCCAACUUCCAAA - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074