Stem-loop ppc-mir-56

Accession

MI0011221

Description

Pristionchus pacificus ppc-mir-56 precursor miRNA

Sequence

gaagaucccuucggugggcucgguggaaucgcuuucgggugcgcgccggcauugcuaugccgUACCCGUAACGCUUCUACCGAGcacuaacaagggucuccucuuc
..(((.(((((.(..(((((((((((((.((.((.((((((((.((.(((...)))..)))))))))).)))).))))))))))).))..))))))))).......

Structure

-----ga   u     c gu  -           u  c  u        c  -c   a 
       aga cccuu g  gg gcucgguggaa cg uu cgggugcg gc  ggc  
       ||| ||||| |  || ||||||||||| || || |||||||| ||  ||| u
       ucu gggaa c  uc cGAGCCAUCUU GC AA GCCCAUgc cg  ucg  
cuucucc   -     - aa  a           C  -  U        -  ua   u 

Annotation confidence Not enough data

Genome context

ABKE03000094.1: 1044609-1044714 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-56

Mature ppc-miR-56

• Accession: MIMAT0011717
• Description: Pristionchus pacificus ppc-miR-56 mature miRNA
• Sequence: 63 - UACCCGUAACGCUUCUACCGAG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074