Stem-loop ppc-mir-56

Accession

MI0011221

Description

Pristionchus pacificus ppc-mir-56 precursor miRNA

Literature search

1 open access papers mention ppc-mir-56
(1 sentences)

Sequence

12957 reads, 3379.0 reads per million, 12 experiments

gaagaucccuucggugggcuCGGUGGAAUCGCUUUCGGGUGCGcgccggcauugcuaugccgUACCCGUAACGCUUCUACCGAGcacuaacaagggucuccucuuc
..(((.(((((.(..(((((((((((((.((.((.((((((((.((.(((...)))..)))))))))).)))).))))))))))).))..))))))))).......

Structure

-----ga   u     c gu  -           U  C  U        c  -c   a 
       aga cccuu g  gg gcuCGGUGGAA CG UU CGGGUGCG gc  ggc  
       ||| ||||| |  || ||||||||||| || || |||||||| ||  ||| u
       ucu gggaa c  uc cGAGCCAUCUU GC AA GCCCAUgc cg  ucg  
cuucucc   -     - aa  a           C  -  U        -  ua   u 

Annotation confidence High

Genome context

ABKE03000094.1: 1044609-1044714 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-56

Mature ppc-miR-56-5p

• Accession: MIMAT0056963
• Description: Pristionchus pacificus ppc-miR-56-5p mature miRNA
• Sequence: 21 - CGGUGGAAUCGCUUUCGGGUGCG - 43
• Evidence: experimental ; 454 [1]

Mature ppc-miR-56-3p

• Accession: MIMAT0011717
• Description: Pristionchus pacificus ppc-miR-56-3p mature miRNA
• Sequence: 63 - UACCCGUAACGCUUCUACCGAG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074