Stem-loop ppc-mir-72

Accession

MI0011154

Description

Pristionchus pacificus ppc-mir-72 precursor miRNA

Literature search

2 open access papers mention ppc-mir-72
(2 sentences)

Sequence

60972 reads, 7121.0 reads per million, 12 experiments

gcaauuggucgcguauccgagugAGGCAAGAUGUUGGCAUAGCUGauggucgaauugaagcaauucCGCUCUGCCACAUGUAGCCACGcacggccgacccgcaguugcu
(((((((((((.(...(((.(((.(((.(.((((.((((.(((........((((((...)))))).))).)))))))).).))).))).)))))))))...)))))).

Structure

-      ---     c uau   a   A   A G    U    U   UGaugguc      a 
 gcaauu   ggucg g   ccg gug GGC A AUGU GGCA AGC        gaauug  
 ||||||   ||||| |   ||| ||| ||| | |||| |||| |||        |||||| a
 cguuga   ccagc c   ggc cGC CCG U UACA CCGU UCG        cuuaac  
u      cgc     - ---   a   A   A G    -    C   -------C      g 

Annotation confidence High

Genome context

ABKE03000011.1: 1057563-1057671 [-]

Mature ppc-miR-72-5p

• Accession: MIMAT0011661
• Description: Pristionchus pacificus ppc-miR-72-5p mature miRNA
• Sequence: 24 - AGGCAAGAUGUUGGCAUAGCUG - 45
• Evidence: experimental ; 454 [1]

Mature ppc-miR-72-3p

• Accession: MIMAT0056929
• Description: Pristionchus pacificus ppc-miR-72-3p mature miRNA
• Sequence: 67 - CGCUCUGCCACAUGUAGCCACG - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074