Stem-loop cbr-mir-35b-1

Accession

MI0010989

Description

Caenorhabditis briggsae cbr-mir-35b-1 precursor miRNA

Sequence

222863 reads, 18749.0 reads per million, 3 experiments

uuggaucggaccucUGCUGGUUUCUGCCGCAGUGAUAuuccaacguagugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccaga
(((((((((((((((((((((((.((((.(.((((((..(((......))).)))))).))))).))))))))))))))))))))))).

Structure

-                       C    G A      uu   ac 
 uuggaucggaccucUGCUGGUUU UGCC C GUGAUA  cca  g
 ||||||||||||||||||||||| |||| | ||||||  |||   
 gaccuagccugGAGAUGGUCAAA GUGG G CACUau  ggu  u
a                       A    - C      -u   ga 

Annotation confidence High

Genome context

chrX: 15371137-15371225 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-1

Mature cbr-miR-35b-1-5p

• Accession: MIMAT0053574
• Description: Caenorhabditis briggsae cbr-miR-35b-1-5p mature miRNA
• Sequence: 15 - UGCUGGUUUCUGCCGCAGUGAUA - 37
• Evidence: experimental ; 454 [1]

Mature cbr-miR-35b-3p

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b-3p mature miRNA
• Sequence: 55 - UCACCGGGUGAAAACUGGUAGAG - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074