Stem-loop ppc-mir-2241b-3

Accession

MI0011239

Description

Pristionchus pacificus ppc-mir-2241b-3 precursor miRNA mir-2241

Gene
family

RF01899; mir-2241

Sequence

184 reads, 15.0 reads per million, 11 experiments

gcucuuuucgauacgccucugAUCUUCAGGAUCCCUGUCUGAACAcagaaauugagugUUCGCAAGGUUUCCUCAAGAUCagggcuucgagucagcu
(((...(((((...(((.((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))..))).

Structure

-   cuu     uac   u        C    UC   GUC       aga 
 gcu   uucga   gcc cugAUCUU AGGA  CCU   UGAACAc   a
 |||   |||||   ||| |||||||| ||||  |||   |||||||   a
 cga   gagcu   cgg gaCUAGAA UCCU  GGA   GCUUgug   u
u   -cu     --u   -        C    UU   -AC       agu 

Annotation confidence High

Genome context

ABKE03000012.1: 5240766-5240862 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-2241b-3

Mature ppc-miR-2241b-5p

• Accession: MIMAT0056974
• Description: Pristionchus pacificus ppc-miR-2241b-5p mature miRNA
• Sequence: 22 - AUCUUCAGGAUCCCUGUCUGAACA - 45
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2241b-3p

• Accession: MIMAT0011732
• Description: Pristionchus pacificus ppc-miR-2241b-3p mature miRNA
• Sequence: 59 - UUCGCAAGGUUUCCUCAAGAUC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074