Stem-loop crm-mir-248

Accession

MI0011063

Description

Caenorhabditis remanei crm-mir-248 precursor miRNA

Literature search

1 open access papers mention crm-mir-248
(7 sentences)

Sequence

104591 reads, 894.0 reads per million, 9 experiments

gcuaguauuuuuuggcagagauuacgauuAGCGAUAUCCAGCCGUUGUAUUCAauagcgcauuugaGUACACGUGCACGGAUACGCUCaucguuuuuguauugccacuucgauugagu
(((.........((((((.((..(((((.((((.(((((.(((((.((((((((........))))))))))).))..))))))))).)))))..))...)))))).........)))

Structure

   aguauuuuu      --a  uu     u    A     -A  -   U        uag 
gcu         uggcag   ga  acgau AGCG UAUCC  GC CGU GUAUUCAa   c
|||         ||||||   ||  ||||| |||| |||||  || ||| ||||||||    
uga         accguu   uu  ugcua UCGC AUAGG  CG GCA CAUGaguu   g
   guuagcuuc      aug  uu     C    -     CA  U   -        uac 

Annotation confidence High

Genome context

Crem_Contig233: 105010-105127 [+]

Mature crm-miR-248-5p

• Accession: MIMAT0056862
• Description: Caenorhabditis remanei crm-miR-248-5p mature miRNA
• Sequence: 30 - AGCGAUAUCCAGCCGUUGUAUUCA - 53
• Evidence: experimental ; 454 [1]

Mature crm-miR-248-3p

• Accession: MIMAT0011544
• Description: Caenorhabditis remanei crm-miR-248-3p mature miRNA
• Sequence: 67 - GUACACGUGCACGGAUACGCUC - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074