Stem-loop ppc-mir-2254

Accession

MI0011169

Description

Pristionchus pacificus ppc-mir-2254 precursor miRNA

Sequence

1600 reads, 100.0 reads per million, 12 experiments

ugcuucgcuuccaaGUGAGUUUUCUGUAGUCCAAGCGggucagacuguccaucgacccgUUUGUACUAUGCAAAGCUUACAGugaaucg
...((((((.....(((((((((.((((((.((((((((((.((.......)))))))))))).)))))).)))))))))))))))...

Structure

ugc      uccaa         C      C          a  cu 
   uucgcu     GUGAGUUUU UGUAGU CAAGCGgguc ga  g
   ||||||     ||||||||| |||||| |||||||||| ||  u
   aaguGA     CAUUCGAAA GUAUCA GUUUgcccag cu  c
gcu      -----         C      U          -  ac 

Annotation confidence High

Genome context

ABKE03000021.1: 1483868-1483956 [+]

Mature ppc-miR-2254-5p

• Accession: MIMAT0056938
• Description: Pristionchus pacificus ppc-miR-2254-5p mature miRNA
• Sequence: 15 - GUGAGUUUUCUGUAGUCCAAGCG - 37
• Evidence: experimental ; 454 [1]

Mature ppc-miR-2254-3p

• Accession: MIMAT0011676
• Description: Pristionchus pacificus ppc-miR-2254-3p mature miRNA
• Sequence: 60 - UUUGUACUAUGCAAAGCUUACAG - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074