Stem-loop crm-let-7

Accession

MI0011037

Description

Caenorhabditis remanei crm-let-7 precursor miRNA

Literature search

3 open access papers mention crm-let-7
(7 sentences)

Sequence

282311 reads, 2955.0 reads per million, 9 experiments

gcggccggucaacacugugcgucuggUGAGGUAGUAGGUUGUAUAGUUuagaaucuuaccuuggugaaCUAUGCAAGUUUCUACCUCACCAGauacagaaucuucucagcugc
(((((.((......((((..((((((((((((((.((.((((((((((((..(........)..)))))))))))).)).))))))))))))))))))......))..)))))

Structure

     -c  ucaaca    gc              U  G            ga ucu 
gcggc  gg      cugu  gucuggUGAGGUAG AG UUGUAUAGUUua  a   u
|||||  ||      ||||  |||||||||||||| || ||||||||||||  |    
cgucg  uc      gaca  uaGACCACUCCAUC UU AACGUAUCaagu  u   a
     ac  uucuaa    --              U  G            gg ucc 

Annotation confidence High

Genome context

Crem_Contig27: 289521-289633 [-]

Mature crm-let-7-5p

• Accession: MIMAT0011519
• Description: Caenorhabditis remanei crm-let-7-5p mature miRNA
• Sequence: 27 - UGAGGUAGUAGGUUGUAUAGUU - 48
• Evidence: experimental ; 454 [1]

Mature crm-let-7-3p

• Accession: MIMAT0056841
• Description: Caenorhabditis remanei crm-let-7-3p mature miRNA
• Sequence: 69 - CUAUGCAAGUUUCUACCUCACCAG - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074